Auburn Completes Waterway Study in Terry Cove and Cotton Bayou

R. Ken Cooper • August 25, 2024

Study recommends dredging and aeration for waterway health

Terry Cove & Cotton Bayou

Orange Beach, Ala. – (OBA) – The Cotton Bayou/Terry Cove bodies of water are part of the Perdido Bay watershed. This system connects to the Gulf of Mexico through Perdido Pass and has traditionally provided nursery habitat for aquatic and bird wildlife.


Development over the years has replaced much of the natural shoreline with seawalls and pier structures. Sediment buildup has disrupted natural water mixing, leading to issues with water quality. These factors contribute to fluctuating temperature, salinity, and dissolved oxygen levels, resulting in algal blooms and fish kills.


The project aims to develop a science-based understanding of the factors affecting the environmental health of the Cotton Bayou/Terry Cove system. The goal is to create a defensible plan to restore the area's ecological balance and improve overall health.


Auburn University has completed a project funded by the Gulf Coast Ecosystem Restoration Council (RESTORE Council) to address low oxygen levels. The project involved data collection and modeling.


Scientists at Auburn University used a grant to create a 3-dimensional hydrodynamic model. This model, called Environmental Fluid Dynamics Code+, evaluates restoration options.


Over the past year, scientists gathered water quality data to build the model. They calibrated and tested it with this data. After testing, they ran various restoration scenarios to improve oxygen levels.

Map of the study area in Cotton Bayou and Terry Cove

The four restoration scenarios that were tested include:


  1. Installing large bottom mounted aerators/bubblers throughout the areas with low oxygen,
  2. Pumping water directly from the Gulf of Mexico to the western end of Cotton Bayou,
  3. Dredging the shallow channel between Cotton Bayou and the channel that leads to Perdido Pass and the open Gulf of Mexico and, 
  4. A combination of aerators and dredging. 


The researchers used their hydrodynamic model to evaluate different scenarios for improving oxygen levels in the Cotton Bayou/Terry Cove system. Their analysis revealed that a combination of targeted dredging and installing bottom aerators would likely be most effective.


According to the model simulations, this mixed approach would help maintain higher dissolved oxygen concentrations in the water. This strategy could reduce the risk of fish kills affecting species like menhaden and mitigate other negative impacts of low oxygen conditions.


By implementing targeted dredging and bottom aeration, the researchers predict they can prevent the seasonal oxygen depletion that threatens the ecological health of the waterway. This combined method addresses both sediment-related oxygen demand and water circulation issues 


ADCNR Commissioner Chris Blankenship said, "The goal of this project was to develop a science-based comprehensive understanding of the factors governing the environmental and ecological health of the Cotton Bayou/Terry Cove system," Commissioner Blankenship went on to say, "These modeling efforts have accomplished that and given us information to guide future restoration activities to improve water quality and avoid fish kills.”


Orange Beach Mayor Tony Kennon also commented on the project. “Water quality is integral to our way of life in Orange Beach. This work provides practical suggestions on maintaining that water quality for our citizens to continue to enjoy.” 


For more information about this project, including model simulation results and observational data, visit
https://www.eng.auburn.edu/users/jsh0024/cb-tc/cb-tc.html.

Share this article w/ Friends...

Foley City Hall
By John Mullen June 1, 2026
Foley, Ala. – (OBA) – Foley will formally accept a check from the state to buy 121 acres in the northern part of the city to use as an industrial park. The grant will help buy the land at the southwest corner of the intersection of the Foley Beach Express and the Baldwin Beach Express.
This Week's Things To Do Ideas on the Gulf Coast
By Jessica A. Taylor June 1, 2026
Orange Beach, Ala. — (OBA) — Well, would you look at that–summer has officially clocked in on the Alabama Gulf Coast. The backpacks are getting tossed aside, the beach towels are coming out of storage, and the calendar is suddenly open to all, with overflowing reasons to get outside and make those memories. This week’
Gulf Shores City Hall
By John Mullen June 1, 2026
Gulf Shores, Ala. – (OBA) – Looking to address parking issues in the beach walking district, Gulf Shores is looking to add more paid parking. The streets involved are just north of the beach, an area where residents and business owners have raised concerns. Residents with hurricane decals will not be charged for parkin
Hurricane Season Begins Today
By R. Ken Cooper June 1, 2026
Orange Beach, Ala. — (OBA) — Hurricane Season starts today, June 1st, and runs through November 30th. Gulf Coast agencies are urging residents to prepare now for hurricane season. Officials say early planning can reduce confusion during an emergency. Families are encouraged to review supplies and evacuation plans.
Orange Beach Senior Center to Close for Renovations
By R. Ken Cooper May 31, 2026
Orange Beach, Ala. — (OBA) — The Senior Center in Orange Beach is scheduled to close temporarily for interior updates. The closure will affect most regular programming for most of June. Some activities will move to other locations, while others will not be held during the closure.
Foley Main Street Recognized
By OBA Staff May 31, 2026
Foley, Ala. — (OBA) — Foley Main Street has earned one of the most respected honors in community development. The organization has been named a 2026 Accredited Main Street America program. This designation is the highest recognition given by Main Street America, a national nonprofit with more than 40 years of experien
Gulf State Park's Shark Fest
By R. Ken Cooper May 31, 2026
Gulf Shores, Ala. — (OBA) — Gulf State Park is bringing back Shark Fest, one of its most popular summer events. The three-day festival focuses on marine life, with an emphasis on Gulf Coast sharks. It will be held at the park's Saltwater Pier in Gulf Shores. Organizers are encouraging families to register and book the
Orange Beach Lady Makos are Six-Time State Champions- Photo by Brent Williams, Wolf Bay Media
By John Mullen May 30, 2026
Orange Beach, Ala. – (OBA) – Just about every time Shane Alexander thinks about his softball team’s incredible run, another point of history seems to reveal itself. Like the fun fact that only one percent of high school athletes experience the thrill of a state championship. In any sport.
Foley Alabama Fire Station 4 Location
By Guy Busby May 30, 2026
Foley, Ala. — (OBA) — The City of Foley is moving ahead with plans for a fourth fire station. The project would provide better coverage on the city's north side. City leaders now have the land and are beginning the design process. Current plans call for the station to be designed in 2026 and for construction to begin
Legendary Marine Gulf Shores
By R. Ken Cooper May 30, 2026
Orange Beach, Ala. — (OBA) — The Sea Glass Initiative announced the return of the Salty Shuffle Charity Poker Cruise. This local fundraiser will benefit Baldwin County residents in need. Organizers expanded the event this year to boost participation. Participants can now join by water or on land.
Show More