Auburn Completes Waterway Study in Terry Cove and Cotton Bayou

R. Ken Cooper • August 25, 2024

Study recommends dredging and aeration for waterway health

Terry Cove & Cotton Bayou

Orange Beach, Ala. – (OBA) – The Cotton Bayou/Terry Cove bodies of water are part of the Perdido Bay watershed. This system connects to the Gulf of Mexico through Perdido Pass and has traditionally provided nursery habitat for aquatic and bird wildlife.


Development over the years has replaced much of the natural shoreline with seawalls and pier structures. Sediment buildup has disrupted natural water mixing, leading to issues with water quality. These factors contribute to fluctuating temperature, salinity, and dissolved oxygen levels, resulting in algal blooms and fish kills.


The project aims to develop a science-based understanding of the factors affecting the environmental health of the Cotton Bayou/Terry Cove system. The goal is to create a defensible plan to restore the area's ecological balance and improve overall health.


Auburn University has completed a project funded by the Gulf Coast Ecosystem Restoration Council (RESTORE Council) to address low oxygen levels. The project involved data collection and modeling.


Scientists at Auburn University used a grant to create a 3-dimensional hydrodynamic model. This model, called Environmental Fluid Dynamics Code+, evaluates restoration options.


Over the past year, scientists gathered water quality data to build the model. They calibrated and tested it with this data. After testing, they ran various restoration scenarios to improve oxygen levels.

Map of the study area in Cotton Bayou and Terry Cove

The four restoration scenarios that were tested include:


  1. Installing large bottom mounted aerators/bubblers throughout the areas with low oxygen,
  2. Pumping water directly from the Gulf of Mexico to the western end of Cotton Bayou,
  3. Dredging the shallow channel between Cotton Bayou and the channel that leads to Perdido Pass and the open Gulf of Mexico and, 
  4. A combination of aerators and dredging. 


The researchers used their hydrodynamic model to evaluate different scenarios for improving oxygen levels in the Cotton Bayou/Terry Cove system. Their analysis revealed that a combination of targeted dredging and installing bottom aerators would likely be most effective.


According to the model simulations, this mixed approach would help maintain higher dissolved oxygen concentrations in the water. This strategy could reduce the risk of fish kills affecting species like menhaden and mitigate other negative impacts of low oxygen conditions.


By implementing targeted dredging and bottom aeration, the researchers predict they can prevent the seasonal oxygen depletion that threatens the ecological health of the waterway. This combined method addresses both sediment-related oxygen demand and water circulation issues 


ADCNR Commissioner Chris Blankenship said, "The goal of this project was to develop a science-based comprehensive understanding of the factors governing the environmental and ecological health of the Cotton Bayou/Terry Cove system," Commissioner Blankenship went on to say, "These modeling efforts have accomplished that and given us information to guide future restoration activities to improve water quality and avoid fish kills.”


Orange Beach Mayor Tony Kennon also commented on the project. “Water quality is integral to our way of life in Orange Beach. This work provides practical suggestions on maintaining that water quality for our citizens to continue to enjoy.” 


For more information about this project, including model simulation results and observational data, visit
https://www.eng.auburn.edu/users/jsh0024/cb-tc/cb-tc.html.

Share this article w/ Friends...

Gulf Coast Cities Announce Christmas And New Year’s Holiday Closures
By OBA Staff December 19, 2025
Orange Beach, Ala. — (OBA) — Cities of Orange Beach, Gulf Shores, and Foley have announced holiday schedules affecting municipal operations during the Christmas and New Year’s holidays. The closures impact non-essential city offices, along with adjustments to garbage and recycling collection. The service changes...
Orange Beach City Council Approves A&R Hotel Plan at Church Site
By OBA Staff December 19, 2025
Orange Beach, Ala. — (OBA) — The Orange Beach City Council has given the green light to a new hotel project. This decision came after a detailed public hearing held at City Hall. The council voted unanimously to approve the plan for the new A&R Hotel. The project will transform a vacant and decaying church into...
New Training Center Under Construction for Orange Beach Fire Rescue
By OBA Staff December 18, 2025
Orange Beach, Ala. — (OBA) — The City of Orange Beach is taking a significant step forward in public safety infrastructure. A new construction project is underway behind Fire Station 1. This development marks a major upgrade for the local fire department. Officials are prioritizing advanced preparation for emergency re
Orange Beach Announces Free Pet Health Services For Residents
By OBA Staff December 18, 2025
Orange Beach, Ala. — (OBA) — The City of Orange Beach is offering a service to local pet owners early next year. Officials recently announced plans to host a special health event for dogs and cats. This initiative aims to improve public safety and animal welfare. Organizers encourage interested residents to act quickly
Alabama Gulf Coast Zoo Welcomes Critically Endangered Red Wolves
By OBA Staff December 17, 2025
Gulf Shores, Ala. — (OBA) — Visitors to the Alabama Gulf Coast Zoo will soon meet two rare new residents. The Gulf Shores Zoo has welcomed a pair of critically endangered American red wolves to their habitat. The brothers are named Jenkins and Walker. Both wolves are approximately two and a half years old.
The Wharf And Heather Loper Team Up To Support Toys For Tots
By OBA Staff December 17, 2025
Orange Beach, Ala. — (OBA) — The Wharf in Orange Beach turned winter fun into real help for local children this holiday season. Working with Heather Loper And Associates at Keller Williams Alabama Gulf Coast, the entertainment district raised thousands of dollars through a special skating program. Visitors enjoyed...
Foley Plans New Streetlights To Make Intersections Safer
By OBA Staff December 17, 2025
Foley, Ala. — (OBA) — Foley drivers will soon see brighter intersections across the city. City leaders have approved new street lights at several busy spots. The changes are meant to make night driving safer for everyone. The main focus is a dark crossing on James Road.
Orange Beach Garden Club Hosts Second Annual Christmas Carols At Museum Tonight
By OBA Staff December 16, 2025
Orange Beach, Ala. — (OBA) — Residents of Orange Beach have another chance to celebrate the holidays together tonight at the Orange Beach Museum. The Orange Beach Garden Club is inviting the community to the second annual Christmas Carols at the Museum. The event will feature music, refreshments, and festive decoration
MAAAC Sponsorships Reach One Million Dollars For Orange Beach Schools
By OBA Staff December 16, 2025
Orange Beach, Ala. — (OBA) — Orange Beach City Schools has reached a major milestone in its effort to support students through community partnerships. Working with the Makos Academics Arts and Athletics Club, known as MAAAC, the district has now secured more than one million dollars in sponsorships. School leaders say
Twenty-Four New Firefighters Graduate In Orange Beach Ceremony
By OBA Staff December 16, 2025
Orange Beach, Ala. — (OBA) — The ranks of first responders in south Alabama grew stronger this past week. A group of new firefighters completed their rigorous training to serve local communities. They celebrated their transition from recruits to sworn professionals during a formal ceremony held in Orange Beach.
Show More