Auburn Completes Waterway Study in Terry Cove and Cotton Bayou

R. Ken Cooper • August 25, 2024

Study recommends dredging and aeration for waterway health

Terry Cove & Cotton Bayou

Orange Beach, Ala. – (OBA) – The Cotton Bayou/Terry Cove bodies of water are part of the Perdido Bay watershed. This system connects to the Gulf of Mexico through Perdido Pass and has traditionally provided nursery habitat for aquatic and bird wildlife.


Development over the years has replaced much of the natural shoreline with seawalls and pier structures. Sediment buildup has disrupted natural water mixing, leading to issues with water quality. These factors contribute to fluctuating temperature, salinity, and dissolved oxygen levels, resulting in algal blooms and fish kills.


The project aims to develop a science-based understanding of the factors affecting the environmental health of the Cotton Bayou/Terry Cove system. The goal is to create a defensible plan to restore the area's ecological balance and improve overall health.


Auburn University has completed a project funded by the Gulf Coast Ecosystem Restoration Council (RESTORE Council) to address low oxygen levels. The project involved data collection and modeling.


Scientists at Auburn University used a grant to create a 3-dimensional hydrodynamic model. This model, called Environmental Fluid Dynamics Code+, evaluates restoration options.


Over the past year, scientists gathered water quality data to build the model. They calibrated and tested it with this data. After testing, they ran various restoration scenarios to improve oxygen levels.

Map of the study area in Cotton Bayou and Terry Cove

The four restoration scenarios that were tested include:


  1. Installing large bottom mounted aerators/bubblers throughout the areas with low oxygen,
  2. Pumping water directly from the Gulf of Mexico to the western end of Cotton Bayou,
  3. Dredging the shallow channel between Cotton Bayou and the channel that leads to Perdido Pass and the open Gulf of Mexico and, 
  4. A combination of aerators and dredging. 


The researchers used their hydrodynamic model to evaluate different scenarios for improving oxygen levels in the Cotton Bayou/Terry Cove system. Their analysis revealed that a combination of targeted dredging and installing bottom aerators would likely be most effective.


According to the model simulations, this mixed approach would help maintain higher dissolved oxygen concentrations in the water. This strategy could reduce the risk of fish kills affecting species like menhaden and mitigate other negative impacts of low oxygen conditions.


By implementing targeted dredging and bottom aeration, the researchers predict they can prevent the seasonal oxygen depletion that threatens the ecological health of the waterway. This combined method addresses both sediment-related oxygen demand and water circulation issues 


ADCNR Commissioner Chris Blankenship said, "The goal of this project was to develop a science-based comprehensive understanding of the factors governing the environmental and ecological health of the Cotton Bayou/Terry Cove system," Commissioner Blankenship went on to say, "These modeling efforts have accomplished that and given us information to guide future restoration activities to improve water quality and avoid fish kills.”


Orange Beach Mayor Tony Kennon also commented on the project. “Water quality is integral to our way of life in Orange Beach. This work provides practical suggestions on maintaining that water quality for our citizens to continue to enjoy.” 


For more information about this project, including model simulation results and observational data, visit
https://www.eng.auburn.edu/users/jsh0024/cb-tc/cb-tc.html.

Share this article w/ Friends...

Black-eyed peas and greens tell a story of survival and luck
By R. Ken Cooper December 31, 2025
Orange Beach, Ala. — (OBA) — Along the Alabama Gulf Coast, New Year’s Day starts with a plate that is part superstition, part family story. In kitchens across the Gulf Coast, cooks lean on peas, greens, and cornbread, then often add a side of fresh seafood. Each item is chosen with a purpose, meant to invite luck...
OBA News’ Top 10 News Stories of 2025
By R. Ken Cooper December 31, 2025
Orange Beach, Ala. — (OBA) — The Top Stories on the OBA News website range from a record-setting boating journey to a serious boat explosion at Safe Harbor Marina, with transportation projects, weather threats, and wildlife updates also drawing strong interest. Readers are following a 71‑year‑old boater’s sprint...
Weekend And Senior Discounts Coming To Alabama Gulf Coast Zoo
By R. Ken Cooper December 30, 2025
Gulf Shores, Ala. — (OBA) — The Alabama Gulf Coast Zoo will offer special admission discounts throughout January and February to welcome the new year. The Gulf Shores nonprofit zoo announced two promotions to make visits more affordable for families and seniors. General admission includes daily keeper chats and...
Foley's newest fire station will be built on the property at 100 East Fern Avenue.
By Guy Busby December 30, 2025
Foley, Ala. — (OBA) — Foley is moving ahead with plans for a new fire station to serve the growing northeast side of the city. City leaders say the project will improve response times and give firefighters better access to major roads in that area. The station will be built on East Fern Avenue between Alabama 59 and...
Gulf Shores Announces its 2026 Winter Concert Series Line-up
By R. Ken Cooper December 30, 2025
Gulf Shores, Ala. — (OBA) — Tickets for the 2026 Winter Concert Series in Gulf Shores are now on sale. The series will host three different acts that feature comedy, Motown, and classic rock on the local stage. The performances will all take place at the Erie H. Meyer Civic Center. Organizers are encouraging fans to...
Church Offers Spaghetti Dinner And Warm Beds During Cold Weather
By R. Ken Cooper December 29, 2025
Foley, Ala. — (OBA) — 506 N. Pine Street in Foley is opening its doors as a warming center for people who need a safe place to escape the cold. Church leaders say the effort is part of their ongoing mission to serve neighbors in need. The warming center will be set up in the church’s Parish Hall and will welcome anyone
Ring in the New Year on the Gulf Coast
By Jessica A. Taylor December 29, 2025
Orange Beach, Ala. — (OBA) — As the calendar turns and a brand-new year approaches, the Gulf Coast comes alive with opportunities to reflect, celebrate, and start fresh. From goal-setting workshops and scenic winter cruises to family-friendly festivities, lively New Year’s Eve celebrations, and bold New Year’s Day...
Police and fire department members to be honored at January event
By R. Ken Cooper December 29, 2025
Orange Beach, Ala. — (OBA) — The Orange Beach Community Association will be honoring our local heroes at its January Pot Luck gathering. This gathering will serve as the annual first responder appreciation dinner and awards ceremony. It is the first Orange Beach potluck dinner of 2026. The association organizes these m
Gulf Coast Rings in 2026 with Polar Bear Plunges
By R. Ken Cooper December 28, 2025
Orange Beach, Ala. — (OBA) — Residents and visitors along the Alabama and Florida Gulf Coast will celebrate the start of 2026 with traditional cold-water plunges. These annual events draw thousands of people to the shoreline to jump into the Gulf at high noon. Local venues in Gulf Shores and Perdido Key provide food...
First Day Hike Leads Families From Sportsplex To Butterfly Garden
By R. Ken Cooper December 28, 2025
Orange Beach, Ala. — (OBA) — Families in Orange Beach will have the opportunity to start the new year outdoors with a guided First Day Hike at Gulf State Park. Park naturalists will lead the event and is suitable for all ages. Organizers say the hike will follow a paved, easy-to-walk path. It also provides several spo
Show More