Auburn Completes Waterway Study in Terry Cove and Cotton Bayou

R. Ken Cooper • August 25, 2024

Study recommends dredging and aeration for waterway health

Terry Cove & Cotton Bayou

Orange Beach, Ala. – (OBA) – The Cotton Bayou/Terry Cove bodies of water are part of the Perdido Bay watershed. This system connects to the Gulf of Mexico through Perdido Pass and has traditionally provided nursery habitat for aquatic and bird wildlife.


Development over the years has replaced much of the natural shoreline with seawalls and pier structures. Sediment buildup has disrupted natural water mixing, leading to issues with water quality. These factors contribute to fluctuating temperature, salinity, and dissolved oxygen levels, resulting in algal blooms and fish kills.


The project aims to develop a science-based understanding of the factors affecting the environmental health of the Cotton Bayou/Terry Cove system. The goal is to create a defensible plan to restore the area's ecological balance and improve overall health.


Auburn University has completed a project funded by the Gulf Coast Ecosystem Restoration Council (RESTORE Council) to address low oxygen levels. The project involved data collection and modeling.


Scientists at Auburn University used a grant to create a 3-dimensional hydrodynamic model. This model, called Environmental Fluid Dynamics Code+, evaluates restoration options.


Over the past year, scientists gathered water quality data to build the model. They calibrated and tested it with this data. After testing, they ran various restoration scenarios to improve oxygen levels.

Map of the study area in Cotton Bayou and Terry Cove

The four restoration scenarios that were tested include:


  1. Installing large bottom mounted aerators/bubblers throughout the areas with low oxygen,
  2. Pumping water directly from the Gulf of Mexico to the western end of Cotton Bayou,
  3. Dredging the shallow channel between Cotton Bayou and the channel that leads to Perdido Pass and the open Gulf of Mexico and, 
  4. A combination of aerators and dredging. 


The researchers used their hydrodynamic model to evaluate different scenarios for improving oxygen levels in the Cotton Bayou/Terry Cove system. Their analysis revealed that a combination of targeted dredging and installing bottom aerators would likely be most effective.


According to the model simulations, this mixed approach would help maintain higher dissolved oxygen concentrations in the water. This strategy could reduce the risk of fish kills affecting species like menhaden and mitigate other negative impacts of low oxygen conditions.


By implementing targeted dredging and bottom aeration, the researchers predict they can prevent the seasonal oxygen depletion that threatens the ecological health of the waterway. This combined method addresses both sediment-related oxygen demand and water circulation issues 


ADCNR Commissioner Chris Blankenship said, "The goal of this project was to develop a science-based comprehensive understanding of the factors governing the environmental and ecological health of the Cotton Bayou/Terry Cove system," Commissioner Blankenship went on to say, "These modeling efforts have accomplished that and given us information to guide future restoration activities to improve water quality and avoid fish kills.”


Orange Beach Mayor Tony Kennon also commented on the project. “Water quality is integral to our way of life in Orange Beach. This work provides practical suggestions on maintaining that water quality for our citizens to continue to enjoy.” 


For more information about this project, including model simulation results and observational data, visit
https://www.eng.auburn.edu/users/jsh0024/cb-tc/cb-tc.html.

Share this article w/ Friends...

Orange Beach Invites Residents To Join 14-Day Wellness Challenge
By OBA Staff February 25, 2026
Orange Beach, Ala. — (OBA) — Orange Beach Parks and Recreation invites residents to join a free 14-day Spring Wellness Challenge aimed at helping people reset their health goals. The program encourages participants to reset their habits and move forward intentionally for the rest of the year. Organizers say it is...
Phase Two of Gulf Shores Waterway East Set to Begin
By OBA Staff February 25, 2026
Gulf Shores, Ala. — (OBA) — The City of Gulf Shores is preparing to launch Phase Two of its Waterway East Extension project, which aims to improve local traffic flow and east/west connectivity. The next phase follows the successful completion of the first section and is fully funded by a RESTORE grant.
Orange Beach Invasion
By OBA Staff February 25, 2026
Orange Beach, Ala. — (OBA) — The Orange Beach Invasion is a popular car and truck show held every spring at The Wharf in Orange Beach. The event attracts custom vehicle owners and enthusiasts from all over the United States and Canada. It features numerous cars, trucks, and hot rods on display, along with vendors...
Gulf Shores Sign Ordinance
By OBA Staff February 24, 2026
Gulf Shores, Ala. — (OBA) — The Gulf Shores City Council had a congratulatory start to this week's meeting. The city Programs & Events Manager, Brigette Reynolds, praised to city and participants for their efforts. Awards were given for for selected floats that took part in the parade.
Jelly Roll Set To Rock The Wharf Amphitheater In June
By OBA Staff February 24, 2026
Orange Beach, Ala. — (OBA) — Jelly Roll is coming to Orange Beach this summer, bringing his blend of country, rock, and southern soul to The Wharf Amphitheater. Fans will have the chance to see the chart-topping artist live when he performs as part of his Little ASS Shed Tour. The concert will also feature rising...
Baldwin County Council On Aging Launches Cell Phone Fridays For Seniors
By OBA Staff February 24, 2026
Robertsdale, Ala. — (OBA) — The Baldwin County Council on Aging has introduced a new weekly program to help older adults become more comfortable using their cell phones. The program, called "Cell Phone Fridays," provides free, one-on-one assistance with everyday phone tasks. It is open to seniors throughout Baldwin...
Planning Commission To Consider Retail Expansion And Subdivision Requests
By John Mullen February 24, 2026
Gulf Shores, Ala. – (OBA) – A site plan review before the Gulf Shores Planning Commission will consider adding commercial buildings and a warehouse in the area of Standard Furniture in Gulf Shores. The property is located on the west side of State Route 59, across from the Pelican Place shopping center.
New Six-Lane Section Planned For Baldwin Beach Express II
By OBA Staff February 23, 2026
Orange Beach, Ala. — (OBA) — The Baldwin County Commission approved a new engineering agreement for the Baldwin Beach Express II. This project will improve the northern section of the highway corridor. The work covers a nearly 5-mile stretch of road from U.S. Highway 31 to Interstate 65.
Your Week on the Gulf Coast: Sunshine, Sounds–Bites & Springtime Fun
By Jessica A. Taylor February 23, 2026
Orange Beach, Ala. — (OBA) — There's no better place to welcome warmer days than the Gulf Coast, where music fills the salty air, fresh flavors are always on the horizon, and community spirit shines bright all year long. Whether you're gathering with friends for bingo at the legendary Flora-Bama Lounge and Package...
Orange Beach Police Chief Trent Johnson To Speak at March Potluck
By OBA Staff February 23, 2026
Orange Beach, Ala. — (OBA) — Monthly community potlucks continue to unite Orange Beach residents for food and fellowship. Hosted by the Orange Beach Community Association, these events take place at the Orange Beach Community Center. Organizers note that the gatherings are open to everyone in the community.
Show More